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  Online resources for microRNA analysis

  Panagiotis Alexiou, Manolis Maragkakis, Artemis G Hatzigeorgiou

  e4

  25-02-2011

  https://doi.org/10.4081/jnai.2161

  4293

  PDF: 598

  HTML: 1598
• 

  Development of network inference among LexA/RecA-dependent manner genes in the SOS response

  Sachiyo Aburatani

  25-11-2010

  https://doi.org/10.4081/jnai.1871

  2021

  PDF: 561

  HTML: 1336

  Supplementary data table: 152
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  MicroRNAs, SNPs and cancer

  Angela V. Vitale, Huiping Tan, Peng Jin

  11-04-2011

  https://doi.org/10.4081/jnai.2236

  4411

  PDF: 592

  HTML: 527
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  Computational prediction of candidate miRNAs and their targets from the completed Linum ussitatissimum genome and EST database

  Tiffanie Y. Moss, Christopher A. Cullis

  05-06-2012

  https://doi.org/10.4081/jnai.4150

  3579

  PDF: 746

  Supplementary Files: 47
• 

  Expression of microRNA during bovine adipogenesis

  Scott L. Pratt, T. Ashley Burns, Erin Curry, Susan K. Duckett

  11-11-2010

  https://doi.org/10.4081/jnai.1872

  7572

  PDF: 0

  HTML: 5461

  Supplementary data table: 180
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  A new entropy model for RNA: part V, Incorporating the Flory-Huggins model in structure prediction and folding

  Wayne Dawson, Gota Kawai

  13-07-2015

  https://doi.org/10.4081/jnai.2657

  1886

  PDF: 1280
• 

  Non-coding RNAs and cancer: microRNAs and beyond

  Rachel Marie Raia, George Adrian Calin

  11-03-2011

  https://doi.org/10.4081/jnai.2305

  4226

  PDF: 665

  HTML: 2057
• 

  Role of microRNAs in the molecular diagnosis of cancer

  Simona Giglio, Andrea Vecchione

  10-05-2010

  https://doi.org/10.4081/jnai.1659

  1249

  PDF: 672

  HTML: 8209
• 

  A new entropy model for RNA: part II. Persistence-related entropic contributions to RNA secondary structure free energy calculations

  Wayne Dawson, Kenji Yamamoto, Kentaro Shimizu, Gota Kawai

  15-03-2013

  https://doi.org/10.4081/jnai.2651

  4155

  PDF: 740

  APPENDIX: 288
• 

  A new entropy model for RNA: part I. A critique of the standard Jacobson-Stockmayer model applied to multiple cross links

  Wayne Dawson, Kenji Yamamoto, Gota Kawai

  24-07-2012

  https://doi.org/10.4081/jnai.2650

  4868

  PDF: 657

  APPENDICES: 30
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  A new entropy model for RNA: part III. Is the folding free energy landscape of RNA funnel shaped?

  Wayne Dawson, Toshikuni Takai, Nobuharu Ito, Kentaro Shimizu, Gota Kawai

  03-11-2014

  https://doi.org/10.4081/jnai.2652

  5237

  PDF: 1085
• 

  A new entropy model for RNA: part IV, The Minimum Free Energy (mFE) and the thermodynamically most-probable folding pathway (TMPFP)

  Wayne Dawson, Gota Kawai

  13-07-2015

  https://doi.org/10.4081/jnai.2653

  1881

  PDF: 888

  Supplement S2: Methods: the vsfold5 algorithm: 132

  Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding: 171