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  Online resources for microRNA analysis

  Panagiotis Alexiou, Manolis Maragkakis, Artemis G Hatzigeorgiou

  e4

  25-02-2011

  https://doi.org/10.4081/jnai.2161

  4327

  PDF: 614

  HTML: 1600
• 

  Development of network inference among LexA/RecA-dependent manner genes in the SOS response

  Sachiyo Aburatani

  25-11-2010

  https://doi.org/10.4081/jnai.1871

  2046

  PDF: 572

  HTML: 1338

  Supplementary data table: 161
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  MicroRNAs, SNPs and cancer

  Angela V. Vitale, Huiping Tan, Peng Jin

  11-04-2011

  https://doi.org/10.4081/jnai.2236

  4436

  PDF: 610

  HTML: 532
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  Computational prediction of candidate miRNAs and their targets from the completed Linum ussitatissimum genome and EST database

  Tiffanie Y. Moss, Christopher A. Cullis

  05-06-2012

  https://doi.org/10.4081/jnai.4150

  3644

  PDF: 768

  Supplementary Files: 57
• 

  Expression of microRNA during bovine adipogenesis

  Scott L. Pratt, T. Ashley Burns, Erin Curry, Susan K. Duckett

  11-11-2010

  https://doi.org/10.4081/jnai.1872

  7597

  PDF: 0

  HTML: 5470

  Supplementary data table: 189
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  A new entropy model for RNA: part V, Incorporating the Flory-Huggins model in structure prediction and folding

  Wayne Dawson, Gota Kawai

  13-07-2015

  https://doi.org/10.4081/jnai.2657

  1967

  PDF: 1483
• 

  Non-coding RNAs and cancer: microRNAs and beyond

  Rachel Marie Raia, George Adrian Calin

  11-03-2011

  https://doi.org/10.4081/jnai.2305

  4253

  PDF: 678

  HTML: 2060
• 

  Role of microRNAs in the molecular diagnosis of cancer

  Simona Giglio, Andrea Vecchione

  10-05-2010

  https://doi.org/10.4081/jnai.1659

  1277

  PDF: 684

  HTML: 8211
• 

  A new entropy model for RNA: part II. Persistence-related entropic contributions to RNA secondary structure free energy calculations

  Wayne Dawson, Kenji Yamamoto, Kentaro Shimizu, Gota Kawai

  15-03-2013

  https://doi.org/10.4081/jnai.2651

  4232

  PDF: 824

  APPENDIX: 296
• 

  A new entropy model for RNA: part I. A critique of the standard Jacobson-Stockmayer model applied to multiple cross links

  Wayne Dawson, Kenji Yamamoto, Gota Kawai

  24-07-2012

  https://doi.org/10.4081/jnai.2650

  4908

  PDF: 671

  APPENDICES: 48
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  A new entropy model for RNA: part III. Is the folding free energy landscape of RNA funnel shaped?

  Wayne Dawson, Toshikuni Takai, Nobuharu Ito, Kentaro Shimizu, Gota Kawai

  03-11-2014

  https://doi.org/10.4081/jnai.2652

  5283

  PDF: 1109
• 

  A new entropy model for RNA: part IV, The Minimum Free Energy (mFE) and the thermodynamically most-probable folding pathway (TMPFP)

  Wayne Dawson, Gota Kawai

  13-07-2015

  https://doi.org/10.4081/jnai.2653

  1939

  PDF: 912

  Supplement S2: Methods: the vsfold5 algorithm: 147

  Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding: 183